Variant report

Variant	rs10976084
Chromosome Location	chr9:7167681-7167682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7166311..7168822-chr9:7171544..7173706,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10815535	0.87[CEU][hapmap]
rs10976071	1.00[CHD][hapmap]
rs10976081	1.00[CHD][hapmap];0.81[MKK][hapmap]
rs10976083	0.87[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10976099	0.83[AMR][1000 genomes]
rs10976103	0.85[EUR][1000 genomes]
rs10976104	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976105	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976106	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976107	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976108	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976109	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976110	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10976111	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11789237	1.00[CHD][hapmap]
rs11790944	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11791749	0.86[AMR][1000 genomes]
rs11791819	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11794430	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11794514	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12004035	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12004053	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1556096	1.00[CHD][hapmap]
rs17519816	1.00[CHD][hapmap]
rs34355058	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34953607	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35605218	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36014488	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60227552	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61635861	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7022348	0.93[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap]
rs7023703	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7035093	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7037553	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7038976	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7043377	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7043782	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7047530	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7868863	1.00[CHD][hapmap]
rs7872232	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892191	chr9:7150997-7173752	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv519762	chr9:7163530-7172498	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv528873	chr9:7163530-7177936	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7147200-7171000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:7147400-7174600	Weak transcription	NHEK	skin
3	chr9:7148600-7172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:7148600-7185400	Weak transcription	HMEC	breast
5	chr9:7149600-7172200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:7149800-7172800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:7150400-7175800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:7150800-7169400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:7150800-7172800	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:7151200-7171000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:7151200-7173000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
15	chr9:7152000-7172600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:7154400-7174400	Weak transcription	Aorta	Aorta
17	chr9:7154600-7169600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:7154800-7171000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:7160800-7174400	Weak transcription	Fetal Stomach	stomach
20	chr9:7160800-7175200	Strong transcription	Primary B cells from cord blood	blood
21	chr9:7160800-7182000	Weak transcription	Dnd41	blood
22	chr9:7161600-7169400	Weak transcription	Fetal Intestine Small	intestine
23	chr9:7161800-7172000	Weak transcription	Brain Anterior Caudate	brain
24	chr9:7162600-7181600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr9:7162600-7182200	Weak transcription	Small Intestine	intestine
26	chr9:7163000-7168200	Strong transcription	Primary T cells from cord blood	blood
27	chr9:7163200-7172800	Weak transcription	Right Ventricle	heart
28	chr9:7163200-7177800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr9:7163400-7180600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:7163800-7172200	Weak transcription	Psoas Muscle	Psoas
31	chr9:7163800-7179000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:7164000-7168000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:7164000-7170000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr9:7164000-7174600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:7164000-7176200	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr9:7164400-7168000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:7164400-7168400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:7164400-7172200	Weak transcription	NHDF-Ad	bronchial
39	chr9:7164600-7168000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr9:7164600-7168600	Strong transcription	Fetal Thymus	thymus
41	chr9:7164600-7178000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr9:7164800-7168000	Strong transcription	Liver	Liver
43	chr9:7165000-7167800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:7165200-7167800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:7165200-7168000	Strong transcription	Thymus	Thymus
46	chr9:7165200-7169800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:7165200-7170800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:7165400-7172400	Weak transcription	Stomach Mucosa	stomach
49	chr9:7165600-7169800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:7165600-7171000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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