Variant report

Variant	rs10976977
Chromosome Location	chr9:8350120-8350121
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10115782	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10125894	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10758962	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10815820	0.91[EUR][1000 genomes]
rs10815824	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10815825	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs10815835	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10815836	1.00[CHB][hapmap]
rs10815837	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10815838	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10976949	0.90[EUR][1000 genomes]
rs10976951	0.88[EUR][1000 genomes]
rs10976955	0.93[EUR][1000 genomes]
rs10976964	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs10976971	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs10976972	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs10976973	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs10976979	0.93[EUR][1000 genomes]
rs10976982	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs10976984	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs10976994	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10976996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10976997	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10976999	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10977002	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10977003	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10977004	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10977013	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10977015	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11532964	0.84[EUR][1000 genomes]
rs11535417	0.90[EUR][1000 genomes]
rs11535418	0.84[EUR][1000 genomes]
rs11535419	0.84[EUR][1000 genomes]
rs11536769	0.91[EUR][1000 genomes]
rs11560544	0.81[EUR][1000 genomes]
rs11560545	0.93[EUR][1000 genomes]
rs11562287	0.82[EUR][1000 genomes]
rs12004215	0.91[YRI][hapmap]
rs12057000	1.00[CHB][hapmap]
rs12236853	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12349797	0.90[CEU][hapmap]
rs12351877	0.90[EUR][1000 genomes]
rs1392514	0.91[YRI][hapmap]
rs16924674	0.84[YRI][hapmap]
rs16924677	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs3736380	0.85[EUR][1000 genomes]
rs3847286	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs59843495	0.88[EUR][1000 genomes]
rs7033267	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73643610	0.93[EUR][1000 genomes]
rs73643611	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7868317	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs7875563	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892225	chr9:8345072-8379313	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain
7	chr9:8341800-8372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:8348000-8350400	Enhancers	Brain Cingulate Gyrus	brain
9	chr9:8348000-8350400	Enhancers	Brain Hippocampus Middle	brain
10	chr9:8348400-8350400	Enhancers	Fetal Heart	heart
11	chr9:8349200-8351600	Enhancers	Fetal Lung	lung
12	chr9:8349400-8350200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:8349400-8350200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:8350000-8350200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:8350000-8351000	Weak transcription	Brain Substantia Nigra	brain
16	chr9:8350000-8363800	Weak transcription	Brain Inferior Temporal Lobe	brain

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