Variant report

Variant	rs11535417
Chromosome Location	chr9:8326165-8326166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10815820	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10815824	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10815825	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976928	0.84[ASN][1000 genomes]
rs10976929	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976937	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976939	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976940	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976941	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976942	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976949	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10976951	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10976955	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976964	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10976971	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976972	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976973	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976977	0.90[EUR][1000 genomes]
rs10976979	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976982	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976984	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10976994	0.81[ASN][1000 genomes]
rs11532964	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11535418	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11535419	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11536769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11560544	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11560545	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562287	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236853	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12237491	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12238522	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12351877	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16924671	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16924677	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736380	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3847286	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56370724	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56964282	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59843495	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61523941	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7033209	0.82[EUR][1000 genomes]
rs7033267	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73640802	0.82[EUR][1000 genomes]
rs73643603	0.82[EUR][1000 genomes]
rs73643607	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73643608	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73643609	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73643610	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643611	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868317	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs995336	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
2	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:8316000-8329600	Weak transcription	Ovary	ovary
4	chr9:8318200-8329000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:8322800-8327800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:8323400-8329000	Weak transcription	Fetal Lung	lung
7	chr9:8323400-8329400	Weak transcription	Brain Anterior Caudate	brain
8	chr9:8323400-8341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:8323800-8328400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:8323800-8329600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:8323800-8329600	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8323800-8329800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:8323800-8341600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:8324000-8345000	Weak transcription	Fetal Brain Male	brain
15	chr9:8324200-8328800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:8324200-8329400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:8324400-8337400	Weak transcription	Brain Germinal Matrix	brain
18	chr9:8326000-8326400	ZNF genes & repeats	Fetal Brain Female	brain

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