Variant report

Variant	rs56370724
Chromosome Location	chr9:8312645-8312646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10815820	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10815824	0.90[ASN][1000 genomes]
rs10815825	0.90[ASN][1000 genomes]
rs10976928	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976929	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976937	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976939	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976940	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976941	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976942	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976949	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10976951	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10976955	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10976964	0.81[ASN][1000 genomes]
rs10976971	0.90[ASN][1000 genomes]
rs10976972	0.90[ASN][1000 genomes]
rs10976973	0.90[ASN][1000 genomes]
rs10976979	0.90[ASN][1000 genomes]
rs10976982	0.90[ASN][1000 genomes]
rs10976984	0.90[ASN][1000 genomes]
rs11532964	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11535417	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11535418	0.81[AMR][1000 genomes]
rs11535419	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11536769	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11560544	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11560545	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11562287	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12236853	0.81[ASN][1000 genomes]
rs12237491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924677	0.81[ASN][1000 genomes]
rs3736380	0.90[ASN][1000 genomes]
rs3847286	0.90[ASN][1000 genomes]
rs56964282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59843495	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61523941	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033209	1.00[EUR][1000 genomes]
rs7033267	0.90[ASN][1000 genomes]
rs73640802	1.00[EUR][1000 genomes]
rs73643603	1.00[EUR][1000 genomes]
rs73643607	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643610	0.84[ASN][1000 genomes]
rs73643611	0.90[ASN][1000 genomes]
rs7868317	0.81[ASN][1000 genomes]
rs995336	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8309200-8315600	Weak transcription	Fetal Kidney	kidney
2	chr9:8310800-8313000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:8310800-8318600	Weak transcription	Fetal Brain Male	brain
4	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
5	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
6	chr9:8311000-8312800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:8311000-8313200	Weak transcription	Fetal Lung	lung
8	chr9:8311000-8319600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:8311200-8315200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:8311200-8318600	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain

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