Variant report

Variant	rs10976939
Chromosome Location	chr9:8310575-8310576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10115782	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10125894	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs10758962	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10815820	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10815824	0.90[ASN][1000 genomes]
rs10815825	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10815835	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs10815836	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10815837	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10815838	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10976928	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976929	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976949	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10976951	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10976955	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10976964	0.89[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10976971	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10976972	0.90[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10976973	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10976977	0.82[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10976979	0.90[ASN][1000 genomes]
rs10976982	0.88[CEU][hapmap];0.90[ASN][1000 genomes]
rs10976984	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10976994	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10976996	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs10976997	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10976999	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10977002	1.00[JPT][hapmap]
rs10977003	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10977004	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10977013	1.00[JPT][hapmap]
rs10977015	1.00[JPT][hapmap]
rs11532964	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11535417	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11535418	0.87[AMR][1000 genomes]
rs11535419	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11536769	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11560544	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11560545	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11562287	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12004215	1.00[YRI][hapmap]
rs12057000	1.00[JPT][hapmap]
rs12236853	0.81[ASN][1000 genomes]
rs12237491	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238522	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12349797	0.89[CEU][hapmap]
rs1392514	1.00[YRI][hapmap]
rs16924671	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924674	0.87[YRI][hapmap]
rs16924677	0.89[CEU][hapmap];0.81[ASN][1000 genomes]
rs3736380	0.90[ASN][1000 genomes]
rs3847286	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs56370724	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56964282	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59843495	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61523941	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033209	1.00[EUR][1000 genomes]
rs7033267	0.90[ASN][1000 genomes]
rs73640802	1.00[EUR][1000 genomes]
rs73643603	1.00[EUR][1000 genomes]
rs73643607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643608	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643609	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643610	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73643611	0.90[ASN][1000 genomes]
rs7868317	0.89[CEU][hapmap];0.81[ASN][1000 genomes]
rs7875563	0.80[CEU][hapmap]
rs995336	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv2762787	chr9:8282283-8310704	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8309200-8315600	Weak transcription	Fetal Kidney	kidney
2	chr9:8310200-8310800	ZNF genes & repeats	Fetal Brain Male	brain
3	chr9:8310400-8310800	ZNF genes & repeats	Fetal Brain Female	brain

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