Variant report
| Variant | rs73643603 |
|---|---|
| Chromosome Location | chr9:8299536-8299537 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10815820 | 0.81[EUR][1000 genomes] |
| rs10976928 | 0.91[EUR][1000 genomes] |
| rs10976929 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10976937 | 1.00[EUR][1000 genomes] |
| rs10976939 | 1.00[EUR][1000 genomes] |
| rs10976940 | 1.00[EUR][1000 genomes] |
| rs10976941 | 1.00[EUR][1000 genomes] |
| rs10976942 | 1.00[EUR][1000 genomes] |
| rs10976949 | 0.82[EUR][1000 genomes] |
| rs11535417 | 0.82[EUR][1000 genomes] |
| rs11535419 | 0.84[EUR][1000 genomes] |
| rs11536769 | 0.81[EUR][1000 genomes] |
| rs12237491 | 1.00[EUR][1000 genomes] |
| rs12238522 | 1.00[EUR][1000 genomes] |
| rs16924671 | 1.00[EUR][1000 genomes] |
| rs56370724 | 1.00[EUR][1000 genomes] |
| rs56964282 | 1.00[EUR][1000 genomes] |
| rs59843495 | 0.84[EUR][1000 genomes] |
| rs61523941 | 1.00[EUR][1000 genomes] |
| rs7033209 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73640802 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73643607 | 1.00[EUR][1000 genomes] |
| rs73643608 | 1.00[EUR][1000 genomes] |
| rs73643609 | 1.00[EUR][1000 genomes] |
| rs995336 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv8414 | chr9:7827373-8511613 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016723 | chr9:8223541-8303017 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1031472 | chr9:8250901-8712547 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv892223 | chr9:8258921-8318948 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS | miRNA target site | n/a | inside rSNPs | diseases |
| 5 | nsv892224 | chr9:8263737-8338431 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS | miRNA target site | n/a | inside rSNPs | diseases |
| 6 | esv2762787 | chr9:8282283-8310704 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:8298800-8299600 | Enhancers | Brain Hippocampus Middle | brain |
| 2 | chr9:8299000-8299600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr9:8299200-8299600 | Enhancers | Brain Angular Gyrus | brain |
