Variant report
Variant | rs10977399 |
---|---|
Chromosome Location | chr9:8954773-8954774 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1036278 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs10511513 | 1.00[JPT][hapmap] |
rs1077882 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10816009 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10816018 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10977410 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10977411 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10977420 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10977421 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10977422 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10977423 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10977424 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10977426 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11515426 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12379353 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1583332 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17662920 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
rs17791622 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1897681 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2381934 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs62529135 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62529136 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62529137 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62529151 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7027339 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7042963 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7847984 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7851829 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7863174 | 1.00[JPT][hapmap] |
rs7866588 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1022796 | chr9:8360729-9110046 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1025800 | chr9:8712487-9030627 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv539980 | chr9:8712487-9030627 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1015898 | chr9:8753534-9011443 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | esv2762789 | chr9:8903357-9030039 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv613299 | chr9:8903857-9032105 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1023691 | chr9:8907952-9030627 | Weak transcription Enhancers Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv539981 | chr9:8907952-9030627 | Enhancers Weak transcription Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv969748 | chr9:8924798-8993842 | Enhancers Weak transcription Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv892246 | chr9:8926071-8993027 | Weak transcription Enhancers Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv1021214 | chr9:8929663-9011443 | Weak transcription Enhancers Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv1015673 | chr9:8929663-9016071 | Enhancers Flanking Active TSS Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv466125 | chr9:8939940-8993618 | Weak transcription Enhancers Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
14 | nsv466126 | chr9:8939940-8993618 | Weak transcription Enhancers Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
15 | nsv613300 | chr9:8939940-8993618 | Enhancers Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:8947000-8955000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
2 | chr9:8950000-8961200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr9:8950400-8954800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
4 | chr9:8950400-8955200 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
5 | chr9:8954400-8955000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |