Variant report
Variant | rs10977897 |
---|---|
Chromosome Location | chr9:9632921-9632922 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10816149 | 0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
rs10816150 | 0.92[ASW][hapmap];0.92[CEU][hapmap];0.94[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10816151 | 0.93[CEU][hapmap] |
rs10816152 | 0.93[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap] |
rs10977891 | 0.81[MEX][hapmap] |
rs10977893 | 0.96[YRI][hapmap] |
rs10977894 | 0.81[MEX][hapmap];0.81[MKK][hapmap] |
rs10977895 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
rs10977898 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10977899 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10977900 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10977901 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10977902 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11793550 | 0.81[AFR][1000 genomes] |
rs12378998 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12380152 | 0.81[MEX][hapmap] |
rs12380707 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12380731 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1326759 | 0.95[AFR][1000 genomes] |
rs1326760 | 0.95[AFR][1000 genomes] |
rs1326761 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes] |
rs1326762 | 0.92[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13288752 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34439454 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34916995 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs66515335 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv613308 | chr9:9409606-9750139 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1033808 | chr9:9431799-9777960 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv892264 | chr9:9440838-9796577 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv892265 | chr9:9476425-9796116 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1023524 | chr9:9496356-9666553 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv892266 | chr9:9506817-9704501 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv892270 | chr9:9591059-9860735 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv613319 | chr9:9630855-9778653 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1028772 | chr9:9631694-9779358 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:9632200-9635800 | Weak transcription | GM12878-XiMat | blood |