Variant report

Variant	rs10977894
Chromosome Location	chr9:9630643-9630644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10816149	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10816150	0.81[MEX][hapmap]
rs10816151	0.90[YRI][hapmap]
rs10816152	0.82[YRI][hapmap]
rs10977860	0.91[CEU][hapmap]
rs10977861	0.91[CEU][hapmap]
rs10977878	0.89[EUR][1000 genomes]
rs10977884	1.00[CEU][hapmap]
rs10977885	0.88[CEU][hapmap]
rs10977886	0.88[CEU][hapmap]
rs10977889	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs10977890	0.86[CEU][hapmap]
rs10977891	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs10977893	1.00[CEU][hapmap]
rs10977895	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10977897	0.81[MEX][hapmap];0.81[MKK][hapmap]
rs10977898	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10977899	0.96[AFR][1000 genomes]
rs10977900	0.98[AFR][1000 genomes]
rs10977904	0.90[CEU][hapmap]
rs10977915	0.86[EUR][1000 genomes]
rs10977920	0.86[CEU][hapmap]
rs11793550	0.92[EUR][1000 genomes]
rs11793566	0.80[EUR][1000 genomes]
rs12375520	0.86[CEU][hapmap]
rs12378124	0.90[CEU][hapmap]
rs12378274	0.90[CEU][hapmap]
rs12378998	0.89[MEX][hapmap]
rs12380006	0.91[CEU][hapmap];0.82[GIH][hapmap]
rs12380152	0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12380707	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12380731	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1326759	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1326760	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1326761	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555920	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs16929886	0.91[CEU][hapmap]
rs16929890	0.91[CEU][hapmap]
rs16929891	0.91[CEU][hapmap]
rs16929902	0.83[CEU][hapmap]
rs16929996	0.90[CEU][hapmap]
rs17181599	0.91[CEU][hapmap]
rs66515335	0.98[AFR][1000 genomes]
rs7031352	0.89[CEU][hapmap]
rs7046633	0.82[CEU][hapmap]
rs7046639	1.00[CEU][hapmap]
rs7856030	0.93[GIH][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap]
rs828825	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9629600-9631800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:9630000-9631000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:9630600-9631000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:9630600-9631600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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