Variant report

Variant	rs12378274
Chromosome Location	chr9:9606216-9606217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:9606153..9607209-chr9:9791346..9792141,4	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10816149	0.91[CEU][hapmap]
rs10977860	0.82[CEU][hapmap]
rs10977861	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10977884	0.91[CEU][hapmap]
rs10977885	0.80[CEU][hapmap]
rs10977886	0.80[CEU][hapmap]
rs10977889	0.91[CEU][hapmap]
rs10977891	0.90[CEU][hapmap]
rs10977893	0.91[CEU][hapmap]
rs10977894	0.90[CEU][hapmap]
rs10977895	0.91[CEU][hapmap]
rs10977904	0.82[CEU][hapmap]
rs12378124	0.82[CEU][hapmap]
rs12380006	0.81[CEU][hapmap]
rs12380152	0.80[CEU][hapmap]
rs1326761	0.90[CEU][hapmap]
rs1555920	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs16929886	0.81[CEU][hapmap]
rs16929890	0.82[CEU][hapmap]
rs16929891	0.82[CEU][hapmap]
rs16929902	0.91[CEU][hapmap]
rs16929996	0.82[CEU][hapmap]
rs17181599	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7031352	0.82[CEU][hapmap]
rs7046639	0.89[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv466133	chr9:9516348-9609283	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv613315	chr9:9516348-9609283	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9605600-9606600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:9605600-9607400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:9605800-9607200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:9605800-9607600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:9606000-9607400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:9606200-9607200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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