Variant report

Variant	rs10978362
Chromosome Location	chr9:108733453-108733454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10733558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759156	0.98[ASN][1000 genomes]
rs10816354	0.80[ASN][1000 genomes]
rs10816356	0.87[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10978361	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1984676	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2417677	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2900407	0.90[ASN][1000 genomes]
rs4076012	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4387040	0.80[ASN][1000 genomes]
rs4609252	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4742659	0.83[ASN][1000 genomes]
rs55721325	0.91[ASN][1000 genomes]
rs55735471	0.91[ASN][1000 genomes]
rs7866652	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108726800-108736800	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:108728800-108733800	Enhancers	Brain Cingulate Gyrus	brain
3	chr9:108729000-108736800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:108730000-108733600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr9:108731800-108734800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:108732200-108741000	Weak transcription	Brain Germinal Matrix	brain
7	chr9:108732400-108738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:108732600-108734000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:108732600-108734400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:108732600-108735600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:108732600-108736200	Weak transcription	Fetal Brain Male	brain
12	chr9:108732600-108738000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:108732600-108738400	Weak transcription	Fetal Brain Female	brain
14	chr9:108732800-108734200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:108732800-108734200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:108732800-108734800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:108733000-108733600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:108733000-108734600	Weak transcription	Brain Anterior Caudate	brain
19	chr9:108733200-108733800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:108733400-108734400	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:108733400-108734400	Weak transcription	Brain Substantia Nigra	brain
22	chr9:108733400-108734800	Weak transcription	Brain Angular Gyrus	brain
23	chr9:108733400-108737000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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