Variant report

Variant	rs4742659
Chromosome Location	chr9:108694397-108694398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10733558	0.83[ASN][1000 genomes]
rs10759156	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10816354	0.96[ASN][1000 genomes]
rs10816356	0.81[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10978344	0.93[ASN][1000 genomes]
rs10978345	0.93[ASN][1000 genomes]
rs10978346	0.93[ASN][1000 genomes]
rs10978361	0.82[ASN][1000 genomes]
rs10978362	0.83[ASN][1000 genomes]
rs1984676	0.99[ASN][1000 genomes]
rs2417669	0.88[ASN][1000 genomes]
rs2417670	0.93[ASN][1000 genomes]
rs2417677	0.84[ASN][1000 genomes]
rs2417678	0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4076012	0.87[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs4387040	0.88[ASN][1000 genomes]
rs4609252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7865804	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108693600-108695200	Enhancers	Brain Cingulate Gyrus	brain
2	chr9:108693600-108695200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr9:108693800-108694600	Weak transcription	Brain Anterior Caudate	brain
4	chr9:108693800-108695400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:108694200-108694400	Enhancers	Brain Angular Gyrus	brain
6	chr9:108694200-108694400	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr9:108694200-108695000	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr9:108694200-108695000	Active TSS	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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