Variant report

Variant	rs10978886
Chromosome Location	chr9:110259324-110259325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2236599	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58843994	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62570074	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033991	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110255200-110259400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:110255400-110264600	Weak transcription	A549	lung
3	chr9:110256600-110259800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:110258000-110260000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:110259200-110259400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:110259200-110260000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:110259200-110260600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:110259200-110261200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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