Variant report

Variant	rs7033991
Chromosome Location	chr9:110268456-110268457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110266158..110268990-chr9:110567554..110570991,3	MCF-7	breast:
2	chr9:110267583..110269257-chr9:110279911..110281508,2	MCF-7	breast:
3	chr9:110266564..110268931-chr9:110271477..110273052,2	MCF-7	breast:
4	chr9:110265825..110268824-chr9:110567926..110570921,2	MCF-7	breast:
5	chr9:110246852..110249468-chr9:110266978..110269904,2	MCF-7	breast:
6	chr9:110261668..110263816-chr9:110265798..110268961,3	MCF-7	breast:
7	chr9:110243039..110245357-chr9:110265653..110268473,2	MCF-7	breast:
8	chr9:110249493..110255181-chr9:110262836..110270007,20	MCF-7	breast:
9	chr9:110268128..110269641-chr9:110301195..110303307,2	MCF-7	breast:
10	chr9:110267386..110269650-chr9:110271472..110273495,3	MCF-7	breast:
11	chr9:110267222..110268991-chr9:111520493..111522835,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10978886	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2236599	0.81[EUR][1000 genomes]
rs58843994	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62570074	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110267000-110270200	Weak transcription	Aorta	Aorta
2	chr9:110267600-110270800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:110267600-110270800	Weak transcription	Stomach Mucosa	stomach
4	chr9:110267800-110269400	Weak transcription	A549	lung
5	chr9:110267800-110270600	Weak transcription	NHLF	lung
6	chr9:110267800-110272200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:110268400-110269600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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