Variant report

Variant	rs10978945
Chromosome Location	chr9:110377174-110377175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110360177..110364097-chr9:110376320..110379638,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10978940	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978942	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978949	0.81[AMR][1000 genomes]
rs10978950	0.92[MEX][hapmap]
rs11788199	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788586	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794132	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110373000-110380200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110373400-110377400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:110374200-110378000	Enhancers	Primary B cells from cord blood	blood
4	chr9:110374200-110378600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:110374400-110379200	Enhancers	Fetal Intestine Large	intestine
6	chr9:110374600-110379200	Enhancers	Fetal Intestine Small	intestine
7	chr9:110374800-110377600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:110374800-110379000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr9:110375000-110377400	Weak transcription	Adipose Nuclei	Adipose
10	chr9:110375400-110378400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:110375600-110377800	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:110375600-110383000	Weak transcription	Right Atrium	heart
13	chr9:110375800-110377400	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:110376200-110378200	Enhancers	Colonic Mucosa	Colon
15	chr9:110376400-110378200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr9:110376400-110378400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:110376600-110377200	Enhancers	Spleen	Spleen
18	chr9:110376800-110378200	Enhancers	Placenta	Placenta
19	chr9:110377000-110377400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr9:110377000-110377600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:110377000-110377600	Enhancers	Esophagus	oesophagus
22	chr9:110377000-110377600	Enhancers	Fetal Muscle Trunk	muscle
23	chr9:110377000-110378600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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