Variant report

Variant	rs10978949
Chromosome Location	chr9:110387076-110387077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512381	1.00[JPT][hapmap]
rs10978940	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs10978945	0.81[AMR][1000 genomes]
rs10978946	0.81[AMR][1000 genomes]
rs10978950	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10978956	0.86[GIH][hapmap]
rs11788199	0.84[AMR][1000 genomes]
rs11788586	0.84[AMR][1000 genomes]
rs11792341	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11794132	0.86[GIH][hapmap]
rs2417805	1.00[LWK][hapmap]
rs56119417	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110384200-110390000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:110384800-110390000	Weak transcription	Stomach Mucosa	stomach
3	chr9:110386200-110387200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:110386200-110387200	Enhancers	Adipose Nuclei	Adipose
5	chr9:110386200-110387200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:110386200-110387200	Enhancers	A549	lung
7	chr9:110386200-110387400	Enhancers	NHDF-Ad	bronchial
8	chr9:110386400-110387200	Enhancers	Fetal Stomach	stomach
9	chr9:110386400-110387200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:110386400-110387200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr9:110386600-110387200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:110386600-110387200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:110386600-110387200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:110386600-110387200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:110386600-110387200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:110386600-110387200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:110386600-110387200	Enhancers	Placenta	Placenta
18	chr9:110386800-110387200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:110386800-110387200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:110386800-110387200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:110386800-110387200	Enhancers	Fetal Muscle Trunk	muscle
22	chr9:110387000-110387200	Enhancers	Stomach Smooth Muscle	stomach
23	chr9:110387000-110399600	Weak transcription	Colonic Mucosa	Colon

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