Variant report

Variant	rs10979002
Chromosome Location	chr9:110444951-110444952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10759253	0.82[AMR][1000 genomes]
rs10759254	0.82[AMR][1000 genomes]
rs10816548	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10816554	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10816556	0.82[AMR][1000 genomes]
rs10816557	0.82[AMR][1000 genomes]
rs10978989	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10978991	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10978992	0.81[ASN][1000 genomes]
rs10978995	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11788158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235793	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56359788	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59749621	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60173602	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62569570	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62569572	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7469799	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110439800-110445200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:110444200-110445400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:110444200-110445800	Weak transcription	Right Atrium	heart
4	chr9:110444400-110445400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr9:110444400-110445600	Weak transcription	Placenta	Placenta
6	chr9:110444400-110448400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:110444600-110445600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:110444600-110445800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:110444600-110446000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:110444800-110445800	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:110444800-110446000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:110444800-110446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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