Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110425959..110427637-chr9:110435730..110438629,2	MCF-7	breast:
2	chr9:110434606..110437399-chr9:110437465..110439039,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10759253	1.00[AFR][1000 genomes]
rs10759254	1.00[AFR][1000 genomes]
rs10816548	0.87[ASN][1000 genomes]
rs10816554	0.88[ASN][1000 genomes]
rs10816556	1.00[AFR][1000 genomes]
rs10816557	1.00[AFR][1000 genomes]
rs10978989	0.87[ASN][1000 genomes]
rs10978991	0.88[ASN][1000 genomes]
rs10978995	0.88[ASN][1000 genomes]
rs10979002	0.81[ASN][1000 genomes]
rs11788158	0.81[ASN][1000 genomes]
rs12235793	0.87[ASN][1000 genomes]
rs2236599	1.00[ASW][hapmap]
rs56359788	0.87[ASN][1000 genomes]
rs59749621	0.81[ASN][1000 genomes]
rs60173602	0.88[ASN][1000 genomes]
rs62569570	0.84[ASN][1000 genomes]
rs62569572	0.87[ASN][1000 genomes]
rs7047394	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7469799	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521747	chr9:110418574-110441113	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110435600-110439600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110436800-110438600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:110436800-110438800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr9:110437000-110438600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:110437200-110444000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:110437400-110440800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:110437600-110444400	Weak transcription	Adipose Nuclei	Adipose
8	chr9:110437800-110440000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr9:110437800-110444200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:110438200-110444000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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