Variant report

Variant	rs7047394
Chromosome Location	chr9:110447312-110447313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10759253	1.00[AFR][1000 genomes]
rs10759254	1.00[AFR][1000 genomes]
rs10816556	1.00[AFR][1000 genomes]
rs10816557	1.00[AFR][1000 genomes]
rs10978992	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7469799	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110444400-110448400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110445200-110447800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:110446000-110450400	Weak transcription	Left Ventricle	heart
4	chr9:110446400-110448200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:110446600-110447600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:110446600-110448000	Weak transcription	Right Atrium	heart
7	chr9:110446600-110448400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110446600-110448600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:110446800-110448000	Weak transcription	HSMM	muscle
10	chr9:110447000-110447400	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:110447000-110448200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:110447000-110450200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:110447200-110448200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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