Variant report

Variant	rs10981928
Chromosome Location	chr9:116551747-116551748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10122669	0.84[EUR][1000 genomes]
rs4332200	0.94[ASN][1000 genomes]
rs7021623	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116549800-116551800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr9:116550000-116551800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
4	chr9:116550600-116552400	Bivalent Enhancer	Fetal Brain Male	brain
5	chr9:116551400-116551800	Enhancers	Fetal Kidney	kidney
6	chr9:116551400-116552000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:116551400-116556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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