Variant report

Variant	rs4332200
Chromosome Location	chr9:116552988-116552989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10981928	0.94[ASN][1000 genomes]
rs35991011	0.82[AFR][1000 genomes]
rs4979282	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs7021623	0.88[ASN][1000 genomes]
rs7030473	0.95[EUR][1000 genomes]
rs7046380	0.93[EUR][1000 genomes]
rs7046526	0.96[EUR][1000 genomes]
rs7046799	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4332200	ZNF618	cis	cerebellum	SCAN
rs4332200	C9orf91	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
2	chr9:116551400-116556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:116552000-116555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:116552800-116553000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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