Variant report

Variant	rs10982386
Chromosome Location	chr9:117493965-117493966
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10982385	0.86[ASN][1000 genomes]
rs10982391	0.98[AMR][1000 genomes]
rs13286148	0.97[AMR][1000 genomes]
rs13286957	0.98[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13293384	0.97[AMR][1000 genomes]
rs13302079	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2185935	0.98[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35842108	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56135551	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7038417	0.98[AMR][1000 genomes]
rs7047097	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117487000-117498000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:117488800-117495000	Weak transcription	NHDF-Ad	bronchial
3	chr9:117493200-117494000	Weak transcription	Right Atrium	heart
4	chr9:117493400-117495400	Enhancers	Fetal Intestine Large	intestine
5	chr9:117493600-117495000	Enhancers	Hela-S3	cervix
6	chr9:117493600-117495200	Enhancers	Fetal Intestine Small	intestine
7	chr9:117493800-117495200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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