Variant report

Variant	rs13286957
Chromosome Location	chr9:117507672-117507673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10817674	0.93[EUR][1000 genomes]
rs10982385	0.89[ASN][1000 genomes]
rs10982386	0.98[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10982391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13283334	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13286148	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13293384	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13302079	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2185935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35842108	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56135551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7038417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7047097	0.90[ASN][1000 genomes]
rs7846744	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117498400-117508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:117501600-117508000	Weak transcription	NHLF	lung
3	chr9:117504200-117507800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:117506600-117510200	Enhancers	NHDF-Ad	bronchial
5	chr9:117506600-117510600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:117506800-117509200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:117506800-117509200	Enhancers	Osteobl	bone
8	chr9:117507000-117508600	Enhancers	HUVEC	blood vessel
9	chr9:117507200-117508200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:117507200-117508400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:117507200-117508400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:117507400-117509200	Enhancers	Brain Anterior Caudate	brain
13	chr9:117507400-117509200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr9:117507400-117509200	Enhancers	Hela-S3	cervix
15	chr9:117507400-117509600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:117507400-117509600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:117507400-117509600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:117507600-117508200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:117507600-117508200	Enhancers	NH-A	brain
20	chr9:117507600-117508400	Enhancers	Brain Angular Gyrus	brain
21	chr9:117507600-117508600	Enhancers	Adipose Nuclei	Adipose
22	chr9:117507600-117508600	Enhancers	Aorta	Aorta
23	chr9:117507600-117509200	Enhancers	Brain Substantia Nigra	brain
24	chr9:117507600-117509400	Enhancers	Brain Hippocampus Middle	brain
25	chr9:117507600-117509600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:117507600-117510200	Enhancers	Brain Germinal Matrix	brain
27	chr9:117507600-117510200	Enhancers	Fetal Stomach	stomach

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