Variant report

Variant	rs10982566
Chromosome Location	chr9:117915132-117915133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117913591..117915684-chr9:117915904..117917813,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10465131	0.98[ASN][1000 genomes]
rs10982548	0.98[ASN][1000 genomes]
rs10982549	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982551	0.98[ASN][1000 genomes]
rs10982560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982561	0.81[ASN][1000 genomes]
rs10982562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10982563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982565	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982568	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982573	1.00[ASN][1000 genomes]
rs10982574	1.00[ASN][1000 genomes]
rs10982575	1.00[ASN][1000 genomes]
rs10982580	1.00[ASN][1000 genomes]
rs10982581	1.00[ASN][1000 genomes]
rs10982582	1.00[ASN][1000 genomes]
rs10982583	0.98[ASN][1000 genomes]
rs10982584	1.00[ASN][1000 genomes]
rs10982585	1.00[ASN][1000 genomes]
rs10982586	1.00[ASN][1000 genomes]
rs10982588	1.00[ASN][1000 genomes]
rs10982589	0.98[ASN][1000 genomes]
rs10982590	0.98[ASN][1000 genomes]
rs10982591	1.00[ASN][1000 genomes]
rs12237691	0.98[ASN][1000 genomes]
rs12338815	1.00[ASN][1000 genomes]
rs12338911	1.00[ASN][1000 genomes]
rs12347993	1.00[ASN][1000 genomes]
rs12348952	1.00[ASN][1000 genomes]
rs16932289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56791225	0.98[ASN][1000 genomes]
rs59205962	0.95[ASN][1000 genomes]
rs60003319	0.95[ASN][1000 genomes]
rs60760004	0.98[ASN][1000 genomes]
rs6478136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478138	1.00[ASN][1000 genomes]
rs6478139	1.00[ASN][1000 genomes]
rs6478140	1.00[ASN][1000 genomes]
rs6478141	1.00[ASN][1000 genomes]
rs6478142	1.00[ASN][1000 genomes]
rs6478144	1.00[ASN][1000 genomes]
rs7027235	1.00[ASN][1000 genomes]
rs7027851	0.98[ASN][1000 genomes]
rs7031730	1.00[ASN][1000 genomes]
rs7847093	1.00[ASN][1000 genomes]
rs7851019	1.00[ASN][1000 genomes]
rs7851086	1.00[ASN][1000 genomes]
rs7851110	1.00[ASN][1000 genomes]
rs7851481	1.00[ASN][1000 genomes]
rs7859387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862558	1.00[ASN][1000 genomes]
rs7864609	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117910000-117918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:117910000-117918800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:117910400-117918800	Weak transcription	NHLF	lung
4	chr9:117911800-117917400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:117912000-117917200	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:117912200-117917200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:117912800-117915600	Enhancers	Fetal Intestine Small	intestine
8	chr9:117913800-117918800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:117914400-117915200	Weak transcription	Fetal Intestine Large	intestine
10	chr9:117914400-117916800	Weak transcription	Rectal Smooth Muscle	rectum

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