Variant report

Variant	rs10465131
Chromosome Location	chr9:117919255-117919256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10120799	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10122188	0.93[EUR][1000 genomes]
rs10124924	0.93[EUR][1000 genomes]
rs10125919	0.93[EUR][1000 genomes]
rs10125923	0.93[EUR][1000 genomes]
rs10125938	0.93[EUR][1000 genomes]
rs10465110	0.89[EUR][1000 genomes]
rs10817717	0.89[EUR][1000 genomes]
rs10817719	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10817720	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982547	0.81[ASN][1000 genomes]
rs10982548	0.95[ASN][1000 genomes]
rs10982549	0.98[ASN][1000 genomes]
rs10982551	1.00[ASN][1000 genomes]
rs10982560	0.98[ASN][1000 genomes]
rs10982561	0.83[ASN][1000 genomes]
rs10982562	0.81[ASN][1000 genomes]
rs10982563	0.98[ASN][1000 genomes]
rs10982564	0.98[ASN][1000 genomes]
rs10982565	0.98[ASN][1000 genomes]
rs10982566	0.98[ASN][1000 genomes]
rs10982568	0.98[ASN][1000 genomes]
rs10982569	0.98[ASN][1000 genomes]
rs10982570	0.98[ASN][1000 genomes]
rs10982571	0.98[ASN][1000 genomes]
rs10982573	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982574	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982575	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982578	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982580	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982581	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982582	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982584	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982585	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982586	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982587	0.87[EUR][1000 genomes]
rs10982588	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982589	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982590	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982591	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982592	0.85[EUR][1000 genomes]
rs10982596	0.90[EUR][1000 genomes]
rs10982597	0.90[EUR][1000 genomes]
rs12115360	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12115362	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12237691	1.00[ASN][1000 genomes]
rs12338815	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12338911	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12345367	0.82[EUR][1000 genomes]
rs12346640	0.81[EUR][1000 genomes]
rs12347993	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12348952	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13289510	0.93[EUR][1000 genomes]
rs16932289	0.98[ASN][1000 genomes]
rs4607691	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56791225	1.00[ASN][1000 genomes]
rs59205962	0.98[ASN][1000 genomes]
rs60003319	0.98[ASN][1000 genomes]
rs60715510	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60760004	1.00[ASN][1000 genomes]
rs6478136	0.98[ASN][1000 genomes]
rs6478138	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478139	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478140	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478141	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478142	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478143	0.87[EUR][1000 genomes]
rs6478144	0.98[ASN][1000 genomes]
rs7027235	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030384	0.85[EUR][1000 genomes]
rs7031730	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031771	0.89[EUR][1000 genomes]
rs7048739	0.85[EUR][1000 genomes]
rs7357687	0.82[EUR][1000 genomes]
rs7357688	0.82[EUR][1000 genomes]
rs7847093	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7851019	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7851086	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7851110	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7851481	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7859387	0.98[ASN][1000 genomes]
rs7862558	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7864609	0.93[ASN][1000 genomes]
rs7866441	0.87[EUR][1000 genomes]
rs9299221	0.82[EUR][1000 genomes]
rs9886849	0.82[EUR][1000 genomes]
rs9886855	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117916800-117920400	Enhancers	Rectal Smooth Muscle	rectum
2	chr9:117917600-117919800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:117917800-117921200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:117917800-117921600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:117918600-117919400	Enhancers	NHEK	skin
6	chr9:117918600-117921800	Enhancers	Colon Smooth Muscle	Colon
7	chr9:117918800-117919400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:117918800-117919400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:117918800-117919400	Enhancers	NHDF-Ad	bronchial
10	chr9:117918800-117919400	Enhancers	Osteobl	bone
11	chr9:117918800-117920200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:117918800-117920400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:117918800-117920400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:117918800-117920400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:117918800-117920400	Enhancers	HSMM	muscle
16	chr9:117918800-117920600	Enhancers	HMEC	breast
17	chr9:117918800-117921600	Enhancers	NHLF	lung
18	chr9:117918800-117921800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:117918800-117922000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr9:117919000-117919400	Enhancers	A549	lung
21	chr9:117919000-117919800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:117919000-117921600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:117919200-117919800	Flanking Active TSS	NH-A	brain
24	chr9:117919200-117920200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:117919200-117920200	Enhancers	Stomach Smooth Muscle	stomach
26	chr9:117919200-117920400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr9:117919200-117920600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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