Variant report

Variant	rs10817717
Chromosome Location	chr9:117923082-117923083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10120799	0.83[EUR][1000 genomes]
rs10122188	0.83[EUR][1000 genomes]
rs10124924	0.83[EUR][1000 genomes]
rs10125919	0.83[EUR][1000 genomes]
rs10125923	0.83[EUR][1000 genomes]
rs10125938	0.83[EUR][1000 genomes]
rs10465110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10465131	0.89[EUR][1000 genomes]
rs10817719	0.83[EUR][1000 genomes]
rs10817720	0.83[EUR][1000 genomes]
rs10982573	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982574	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982575	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982578	0.84[EUR][1000 genomes]
rs10982580	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10982581	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982582	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982583	0.89[EUR][1000 genomes]
rs10982584	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982585	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982586	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982587	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982588	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10982589	0.87[EUR][1000 genomes]
rs10982590	0.87[EUR][1000 genomes]
rs10982591	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982592	0.91[EUR][1000 genomes]
rs12115362	0.83[EUR][1000 genomes]
rs12338815	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12338911	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12343517	0.83[JPT][hapmap]
rs12347993	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12348952	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12683537	0.95[JPT][hapmap]
rs12685855	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs13289510	0.83[EUR][1000 genomes]
rs1335346	0.83[JPT][hapmap]
rs4607691	0.83[EUR][1000 genomes]
rs60715510	0.81[EUR][1000 genomes]
rs6478135	0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs6478138	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6478139	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6478140	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6478141	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6478142	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6478143	0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027235	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7027851	0.89[EUR][1000 genomes]
rs7030384	0.91[EUR][1000 genomes]
rs7031730	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7031771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7048739	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7847093	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7851019	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7851086	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7851110	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7851481	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7862558	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7866441	0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117920400-117925800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:117920400-117925800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:117920600-117926400	Weak transcription	NHEK	skin
4	chr9:117921400-117926600	Weak transcription	HSMMtube	muscle
5	chr9:117921600-117923800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:117921600-117925800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:117921600-117925800	Weak transcription	NHLF	lung
8	chr9:117921600-117926400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:117921600-117926600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:117921600-117926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:117921800-117923400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:117921800-117923800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:117921800-117926800	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:117922000-117923800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:117922000-117923800	Weak transcription	Fetal Heart	heart
16	chr9:117922000-117923800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:117922000-117924800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:117922000-117925800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:117922000-117944600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:117923000-117923200	Enhancers	NHDF-Ad	bronchial
21	chr9:117923000-117923800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:117923000-117924000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:117923000-117924200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:117923000-117924800	Enhancers	Fetal Intestine Small	intestine

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