Variant report

Variant	rs12115362
Chromosome Location	chr9:117938697-117938698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10120799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122188	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10124924	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125919	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125938	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465110	0.83[EUR][1000 genomes]
rs10465131	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10817717	0.83[EUR][1000 genomes]
rs10817719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817724	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982573	0.90[EUR][1000 genomes]
rs10982574	0.90[EUR][1000 genomes]
rs10982575	0.90[EUR][1000 genomes]
rs10982578	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10982580	0.85[EUR][1000 genomes]
rs10982581	0.90[EUR][1000 genomes]
rs10982582	0.90[EUR][1000 genomes]
rs10982583	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982584	0.90[EUR][1000 genomes]
rs10982585	0.90[EUR][1000 genomes]
rs10982586	0.93[EUR][1000 genomes]
rs10982587	0.85[EUR][1000 genomes]
rs10982588	0.94[EUR][1000 genomes]
rs10982589	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10982590	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10982591	0.93[EUR][1000 genomes]
rs10982592	0.91[EUR][1000 genomes]
rs10982596	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982597	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982599	0.92[ASN][1000 genomes]
rs10982600	0.83[EUR][1000 genomes]
rs12115360	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338815	0.90[EUR][1000 genomes]
rs12338911	0.90[EUR][1000 genomes]
rs12345367	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12346640	0.88[EUR][1000 genomes]
rs12347993	0.90[EUR][1000 genomes]
rs12348952	0.90[EUR][1000 genomes]
rs12350544	0.94[ASN][1000 genomes]
rs12350563	0.94[ASN][1000 genomes]
rs13289510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932349	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34459511	0.82[EUR][1000 genomes]
rs35263530	0.82[EUR][1000 genomes]
rs4607691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57367241	0.96[ASN][1000 genomes]
rs60715510	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478138	0.90[EUR][1000 genomes]
rs6478139	0.90[EUR][1000 genomes]
rs6478140	0.93[EUR][1000 genomes]
rs6478141	0.93[EUR][1000 genomes]
rs6478142	0.93[EUR][1000 genomes]
rs6478143	0.85[EUR][1000 genomes]
rs7027235	0.90[EUR][1000 genomes]
rs7027851	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7030384	0.91[EUR][1000 genomes]
rs7031730	0.90[EUR][1000 genomes]
rs7031771	0.83[EUR][1000 genomes]
rs7048739	0.91[EUR][1000 genomes]
rs71505533	0.82[ASN][1000 genomes]
rs7357687	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7357688	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7847093	0.93[EUR][1000 genomes]
rs7851019	0.93[EUR][1000 genomes]
rs7851086	0.93[EUR][1000 genomes]
rs7851110	0.93[EUR][1000 genomes]
rs7851481	0.93[EUR][1000 genomes]
rs7862558	0.93[EUR][1000 genomes]
rs7866441	0.85[EUR][1000 genomes]
rs9299221	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886849	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886855	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117922000-117944600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:117933400-117941400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:117933400-117942200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:117933400-117943400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:117933600-117940200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:117933600-117942200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:117933600-117944400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:117935000-117941400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:117935200-117941200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:117937800-117940800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:117938400-117939200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:117938400-117939200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:117938600-117942600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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