Variant report

Variant	rs10817724
Chromosome Location	chr9:117953285-117953286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117953158..117955908-chr9:117957675..117960563,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10119915	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10120799	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10122188	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10124924	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10125919	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10125923	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10125938	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817719	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10817720	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10817726	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10982578	0.96[AFR][1000 genomes]
rs10982583	0.96[AFR][1000 genomes]
rs10982589	0.96[AFR][1000 genomes]
rs10982590	0.96[AFR][1000 genomes]
rs10982596	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982597	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982599	0.90[ASN][1000 genomes]
rs10982600	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10982610	0.81[ASN][1000 genomes]
rs10982613	0.86[AMR][1000 genomes]
rs10982615	0.85[AMR][1000 genomes]
rs12115360	0.90[ASN][1000 genomes]
rs12115362	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12235377	0.88[ASN][1000 genomes]
rs12339665	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12345367	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12350544	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12350563	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13289510	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1414149	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16932349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932380	0.85[AMR][1000 genomes]
rs34459511	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35263530	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4607691	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57367241	0.86[ASN][1000 genomes]
rs60715510	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71505533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7357687	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7357688	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9299221	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9886849	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9886855	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117945600-117959400	Weak transcription	Fetal Kidney	kidney
3	chr9:117945800-117959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117947000-117954200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:117947200-117954400	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:117953000-117953400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr9:117953000-117953600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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