Variant report

Variant	rs10119915
Chromosome Location	chr9:117969573-117969574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10120799	1.00[JPT][hapmap]
rs10122188	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10125919	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10817719	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10817720	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10817724	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10817726	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817727	0.88[EUR][1000 genomes]
rs10982560	1.00[JPT][hapmap]
rs10982563	1.00[JPT][hapmap]
rs10982564	1.00[JPT][hapmap]
rs10982565	1.00[JPT][hapmap]
rs10982568	1.00[JPT][hapmap]
rs10982569	1.00[JPT][hapmap]
rs10982570	1.00[JPT][hapmap]
rs10982571	1.00[JPT][hapmap]
rs10982585	1.00[JPT][hapmap]
rs10982589	1.00[JPT][hapmap]
rs10982590	1.00[JPT][hapmap]
rs10982591	1.00[JPT][hapmap]
rs10982597	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10982607	0.91[ASN][1000 genomes]
rs10982610	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10982613	0.80[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10982615	0.83[EUR][1000 genomes]
rs12235377	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12237691	1.00[JPT][hapmap]
rs12350544	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12350563	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1414149	0.91[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932289	1.00[JPT][hapmap]
rs16932349	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16932380	0.83[EUR][1000 genomes]
rs6478136	1.00[JPT][hapmap]
rs6478141	1.00[JPT][hapmap]
rs7027235	1.00[JPT][hapmap]
rs71505533	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7847093	1.00[JPT][hapmap]
rs7851019	1.00[JPT][hapmap]
rs7851086	1.00[JPT][hapmap]
rs7851110	1.00[JPT][hapmap]
rs7851481	1.00[JPT][hapmap]
rs7859387	1.00[JPT][hapmap]
rs7862558	1.00[JPT][hapmap]
rs7864609	1.00[JPT][hapmap]
rs9886855	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117960800-117975800	Weak transcription	Fetal Kidney	kidney
2	chr9:117962200-117972600	Enhancers	NHDF-Ad	bronchial
3	chr9:117962400-117972400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117963000-117972600	Enhancers	NHEK	skin
5	chr9:117963000-117972600	Enhancers	Osteobl	bone
6	chr9:117963000-117977200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:117963200-117969800	Enhancers	NHLF	lung
8	chr9:117964600-117970000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:117964600-117972800	Enhancers	NH-A	brain
10	chr9:117965200-117972400	Enhancers	HMEC	breast
11	chr9:117966000-117970400	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:117966000-117973800	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:117966200-117973600	Weak transcription	Fetal Stomach	stomach
14	chr9:117966400-117972800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:117966800-117969800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:117967000-117972600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:117967800-117979400	Weak transcription	Aorta	Aorta
18	chr9:117968000-117972400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:117968200-117969600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:117968200-117970600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:117968800-117969600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:117968800-117969600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr9:117968800-117970000	Flanking Active TSS	GM12878-XiMat	blood
24	chr9:117968800-117972200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:117969000-117969600	Enhancers	Esophagus	oesophagus
26	chr9:117969000-117969600	Enhancers	Placenta	Placenta
27	chr9:117969000-117969600	Enhancers	Spleen	Spleen
28	chr9:117969000-117969800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:117969000-117975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:117969000-117976800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:117969200-117969600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:117969200-117969600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr9:117969200-117969800	Enhancers	Rectal Smooth Muscle	rectum
34	chr9:117969200-117970800	Enhancers	Primary B cells from peripheral blood	blood
35	chr9:117969200-117971800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr9:117969200-117975000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:117969400-117969600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:117969400-117969800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr9:117969400-117969800	Enhancers	Fetal Lung	lung
40	chr9:117969400-117970000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr9:117969400-117972200	Enhancers	HSMM	muscle
42	chr9:117969400-117974600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:117969400-117976000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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