Variant report

Variant	rs9886855
Chromosome Location	chr9:117948044-117948045
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10119915	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10120799	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10122188	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124924	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125919	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125923	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125938	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10465131	0.82[EUR][1000 genomes]
rs10817709	0.90[CEU][hapmap];0.82[YRI][hapmap]
rs10817710	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs10817711	0.82[YRI][hapmap]
rs10817719	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817720	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817724	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817726	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10982516	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs10982518	0.90[CEU][hapmap];0.85[YRI][hapmap]
rs10982519	0.90[CEU][hapmap];0.85[YRI][hapmap]
rs10982560	1.00[JPT][hapmap]
rs10982563	1.00[JPT][hapmap]
rs10982564	1.00[JPT][hapmap]
rs10982565	1.00[JPT][hapmap]
rs10982568	1.00[JPT][hapmap]
rs10982569	1.00[JPT][hapmap]
rs10982570	1.00[JPT][hapmap]
rs10982571	1.00[JPT][hapmap]
rs10982578	1.00[AFR][1000 genomes]
rs10982583	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10982585	1.00[JPT][hapmap]
rs10982586	0.82[EUR][1000 genomes]
rs10982588	0.83[EUR][1000 genomes]
rs10982589	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10982590	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10982591	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10982592	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10982596	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982597	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982599	0.96[ASN][1000 genomes]
rs10982600	1.00[AFR][1000 genomes]
rs10982610	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12001569	1.00[YRI][hapmap]
rs12115360	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12115362	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12235159	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs12235377	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12237691	1.00[JPT][hapmap]
rs12339665	0.96[AFR][1000 genomes]
rs12340324	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs12345367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346640	0.83[EUR][1000 genomes]
rs12350544	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12350563	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13288003	0.81[CHB][hapmap]
rs13289510	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1335334	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1414149	0.91[CHB][hapmap]
rs16932289	1.00[JPT][hapmap]
rs16932349	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34459511	0.96[AFR][1000 genomes]
rs35263530	0.96[AFR][1000 genomes]
rs4607691	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57367241	0.92[ASN][1000 genomes]
rs60715510	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478136	1.00[JPT][hapmap]
rs6478140	0.82[EUR][1000 genomes]
rs6478141	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6478142	0.82[EUR][1000 genomes]
rs7027235	1.00[JPT][hapmap]
rs7027851	0.82[EUR][1000 genomes]
rs7030384	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7048739	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs71505533	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7357687	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7357688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847093	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7851019	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7851086	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7851110	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7851481	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7859387	1.00[JPT][hapmap]
rs7862558	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7864609	1.00[JPT][hapmap]
rs9299221	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886849	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117945600-117959400	Weak transcription	Fetal Kidney	kidney
3	chr9:117945800-117959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117947000-117954200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:117947200-117949600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:117947200-117953000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:117947200-117954400	Weak transcription	Colon Smooth Muscle	Colon

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