Variant report

Variant	rs71505533
Chromosome Location	chr9:117963059-117963060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10119915	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10120799	0.96[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10122188	0.86[ASN][1000 genomes]
rs10124924	0.86[ASN][1000 genomes]
rs10125919	0.82[ASN][1000 genomes]
rs10125923	0.82[ASN][1000 genomes]
rs10125938	0.82[ASN][1000 genomes]
rs10817719	0.96[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10817720	0.96[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10817724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10817726	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982578	0.96[AFR][1000 genomes]
rs10982583	0.96[AFR][1000 genomes]
rs10982589	0.96[AFR][1000 genomes]
rs10982590	0.96[AFR][1000 genomes]
rs10982596	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982597	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982599	0.82[ASN][1000 genomes]
rs10982600	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10982607	0.87[ASN][1000 genomes]
rs10982610	0.90[ASN][1000 genomes]
rs10982613	0.86[AMR][1000 genomes]
rs10982615	0.85[AMR][1000 genomes]
rs12115360	0.82[ASN][1000 genomes]
rs12115362	0.82[ASN][1000 genomes]
rs12235377	0.96[ASN][1000 genomes]
rs12339665	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12345367	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12350544	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12350563	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13289510	0.82[ASN][1000 genomes]
rs1414149	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16932349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16932380	0.85[AMR][1000 genomes]
rs34459511	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35263530	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4607691	0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60715510	0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7357687	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7357688	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9299221	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9886849	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9886855	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117955600-117969000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:117959400-117968600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:117960600-117963200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:117960600-117964400	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:117960600-117964600	Weak transcription	NH-A	brain
7	chr9:117960600-117967400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:117960600-117969000	Weak transcription	Spleen	Spleen
9	chr9:117960800-117963200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:117960800-117963200	Weak transcription	NHLF	lung
11	chr9:117960800-117963400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:117960800-117964600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:117960800-117964600	Weak transcription	Fetal Stomach	stomach
14	chr9:117960800-117965000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:117960800-117968800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:117960800-117969400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:117960800-117975800	Weak transcription	Fetal Kidney	kidney
18	chr9:117961600-117965600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:117962200-117972600	Enhancers	NHDF-Ad	bronchial
20	chr9:117962400-117963600	Enhancers	Colon Smooth Muscle	Colon
21	chr9:117962400-117964600	Weak transcription	Fetal Lung	lung
22	chr9:117962400-117966400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:117962400-117972400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:117962600-117963800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:117962600-117963800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:117962800-117963600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:117962800-117963800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:117963000-117963600	Enhancers	HSMM	muscle
29	chr9:117963000-117963800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:117963000-117964000	Enhancers	HMEC	breast
31	chr9:117963000-117965600	Enhancers	Adipose Nuclei	Adipose
32	chr9:117963000-117972600	Enhancers	NHEK	skin
33	chr9:117963000-117972600	Enhancers	Osteobl	bone
34	chr9:117963000-117977200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links