Variant report

Variant	rs10982596
Chromosome Location	chr9:117944735-117944736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10120799	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10122188	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124924	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125919	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125923	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125938	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10465131	0.90[EUR][1000 genomes]
rs10817719	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817720	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817724	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982573	0.87[EUR][1000 genomes]
rs10982574	0.87[EUR][1000 genomes]
rs10982575	0.87[EUR][1000 genomes]
rs10982578	0.84[EUR][1000 genomes]
rs10982580	0.82[EUR][1000 genomes]
rs10982581	0.87[EUR][1000 genomes]
rs10982582	0.87[EUR][1000 genomes]
rs10982583	0.90[EUR][1000 genomes]
rs10982584	0.87[EUR][1000 genomes]
rs10982585	0.87[EUR][1000 genomes]
rs10982586	0.90[EUR][1000 genomes]
rs10982587	0.83[EUR][1000 genomes]
rs10982588	0.91[EUR][1000 genomes]
rs10982589	0.93[EUR][1000 genomes]
rs10982590	0.93[EUR][1000 genomes]
rs10982591	0.90[EUR][1000 genomes]
rs10982592	0.89[EUR][1000 genomes]
rs10982597	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982599	0.96[ASN][1000 genomes]
rs10982600	0.86[EUR][1000 genomes]
rs12115360	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12115362	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12235377	0.82[ASN][1000 genomes]
rs12338815	0.87[EUR][1000 genomes]
rs12338911	0.87[EUR][1000 genomes]
rs12339665	0.82[EUR][1000 genomes]
rs12345367	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346640	0.91[EUR][1000 genomes]
rs12347993	0.87[EUR][1000 genomes]
rs12348952	0.87[EUR][1000 genomes]
rs12350544	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12350563	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13289510	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932349	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34459511	0.85[EUR][1000 genomes]
rs35263530	0.85[EUR][1000 genomes]
rs4607691	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57367241	0.92[ASN][1000 genomes]
rs60715510	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478138	0.87[EUR][1000 genomes]
rs6478139	0.87[EUR][1000 genomes]
rs6478140	0.90[EUR][1000 genomes]
rs6478141	0.90[EUR][1000 genomes]
rs6478142	0.90[EUR][1000 genomes]
rs6478143	0.83[EUR][1000 genomes]
rs7027235	0.87[EUR][1000 genomes]
rs7027851	0.90[EUR][1000 genomes]
rs7030384	0.89[EUR][1000 genomes]
rs7031730	0.87[EUR][1000 genomes]
rs7048739	0.89[EUR][1000 genomes]
rs71505533	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7357687	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7357688	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847093	0.90[EUR][1000 genomes]
rs7851019	0.90[EUR][1000 genomes]
rs7851086	0.90[EUR][1000 genomes]
rs7851110	0.90[EUR][1000 genomes]
rs7851481	0.90[EUR][1000 genomes]
rs7862558	0.90[EUR][1000 genomes]
rs7866441	0.83[EUR][1000 genomes]
rs9299221	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886849	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886855	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117943200-117947000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:117943600-117945400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:117944000-117947200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:117944200-117945000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:117944400-117944800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:117944400-117944800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:117944400-117945000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:117944400-117945000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:117944400-117945000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:117944400-117945200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:117944400-117946200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:117944400-117946200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:117944400-117946200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:117944400-117946200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:117944400-117947000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:117944600-117944800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:117944600-117944800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr9:117944600-117944800	Enhancers	Colon Smooth Muscle	Colon
20	chr9:117944600-117946200	Enhancers	H1 Cell Line	embryonic stem cell

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