Variant report

Variant	rs12001569
Chromosome Location	chr9:118028114-118028115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1029341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10481680	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10817709	0.82[YRI][hapmap]
rs10817710	0.85[YRI][hapmap]
rs10817711	0.82[YRI][hapmap]
rs10817719	1.00[YRI][hapmap]
rs10817720	1.00[YRI][hapmap]
rs10817726	1.00[YRI][hapmap]
rs10817734	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10817741	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10817742	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982516	0.82[YRI][hapmap]
rs10982518	0.85[YRI][hapmap]
rs10982519	0.85[YRI][hapmap]
rs10982589	1.00[YRI][hapmap]
rs10982590	1.00[YRI][hapmap]
rs11998787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12235159	0.82[YRI][hapmap]
rs12338583	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12340324	0.82[YRI][hapmap]
rs12348813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335334	1.00[YRI][hapmap]
rs16932349	1.00[YRI][hapmap]
rs2285315	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2418327	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35686252	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4112338	1.00[CEU][hapmap]
rs4147051	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72762372	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762378	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72764238	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7846857	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9886855	1.00[YRI][hapmap]
rs9987570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118023000-118029000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:118023000-118029000	Enhancers	HMEC	breast
3	chr9:118023000-118029200	Enhancers	NHDF-Ad	bronchial
4	chr9:118023400-118029400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:118023400-118029400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118023600-118028800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:118023600-118029200	Enhancers	Colon Smooth Muscle	Colon
8	chr9:118023600-118029200	Enhancers	Osteobl	bone
9	chr9:118023600-118029400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:118023600-118029400	Enhancers	NHLF	lung
11	chr9:118023800-118029000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:118024000-118029000	Enhancers	Fetal Stomach	stomach
13	chr9:118024000-118029400	Enhancers	Fetal Lung	lung
14	chr9:118024600-118028200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:118025200-118028400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:118026200-118029200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:118027800-118028800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:118027800-118029600	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:118028000-118028200	Enhancers	NH-A	brain
20	chr9:118028000-118028400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:118028000-118028600	Enhancers	NHEK	skin
22	chr9:118028000-118028800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:118028000-118028800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:118028000-118028800	Enhancers	HSMMtube	muscle
25	chr9:118028000-118029000	Enhancers	Adipose Nuclei	Adipose
26	chr9:118028000-118029200	Enhancers	Stomach Smooth Muscle	stomach

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