Variant report

Variant	rs1029341
Chromosome Location	chr9:118055855-118055856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10481680	0.82[EUR][1000 genomes]
rs10817741	0.82[EUR][1000 genomes]
rs10817742	0.82[EUR][1000 genomes]
rs11998787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12001569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12338583	0.82[EUR][1000 genomes]
rs12348813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2285315	0.82[EUR][1000 genomes]
rs2418327	0.82[EUR][1000 genomes]
rs35686252	0.81[EUR][1000 genomes]
rs4147051	0.82[EUR][1000 genomes]
rs72762372	0.81[EUR][1000 genomes]
rs72762378	0.84[EUR][1000 genomes]
rs7846857	0.82[EUR][1000 genomes]
rs9987570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118052000-118060000	Enhancers	Fetal Intestine Small	intestine
2	chr9:118052200-118059600	Enhancers	Fetal Intestine Large	intestine
3	chr9:118052600-118056200	Enhancers	Osteobl	bone
4	chr9:118053200-118059400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:118053400-118056000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:118053800-118056000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:118054000-118056000	Enhancers	NH-A	brain
8	chr9:118054000-118056400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:118054000-118056800	Enhancers	Fetal Muscle Leg	muscle
10	chr9:118054200-118056000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:118054200-118059400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:118054400-118059200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:118054800-118056800	Enhancers	Aorta	Aorta
14	chr9:118054800-118059200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:118054800-118059200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:118055000-118057600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:118055000-118059200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:118055200-118056200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:118055200-118057400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:118055200-118057800	Weak transcription	Fetal Kidney	kidney
21	chr9:118055200-118058400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:118055200-118059000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:118055200-118059200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:118055200-118059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:118055200-118063200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:118055400-118056000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:118055400-118059400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr9:118055600-118057400	Weak transcription	Small Intestine	intestine
29	chr9:118055600-118057600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr9:118055600-118059400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:118055800-118059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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