Variant report

Variant	rs2285315
Chromosome Location	chr9:118054178-118054179
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf91-5	chr9:118054061-118054215	NONHSAT134410
2	lnc-C9orf91-5	chr9:118054127-118054215	NONHSAT134411

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1029341	0.82[EUR][1000 genomes]
rs10481680	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10817733	0.81[ASN][1000 genomes]
rs10817734	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817741	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817742	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982654	0.88[ASN][1000 genomes]
rs12001569	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12338583	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12348813	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2285314	0.83[ASN][1000 genomes]
rs2418327	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35686252	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4112338	1.00[CEU][hapmap]
rs4147051	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72762372	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72762378	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72764238	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7846857	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118051800-118055200	Enhancers	Colon Smooth Muscle	Colon
2	chr9:118052000-118060000	Enhancers	Fetal Intestine Small	intestine
3	chr9:118052200-118059600	Enhancers	Fetal Intestine Large	intestine
4	chr9:118052600-118056200	Enhancers	Osteobl	bone
5	chr9:118052800-118054600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:118052800-118055000	Enhancers	Duodenum Mucosa	Duodenum
7	chr9:118052800-118055200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:118052800-118055400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:118052800-118055600	Enhancers	Stomach Mucosa	stomach
10	chr9:118053000-118054200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:118053000-118054800	Weak transcription	Gastric	stomach
12	chr9:118053000-118055200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:118053000-118055200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:118053000-118055800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:118053200-118054800	Weak transcription	Lung	lung
16	chr9:118053200-118059400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:118053400-118055200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr9:118053400-118055200	Enhancers	NHEK	skin
19	chr9:118053400-118055400	Enhancers	HMEC	breast
20	chr9:118053400-118056000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:118053600-118054200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:118053600-118054400	Enhancers	Aorta	Aorta
23	chr9:118053600-118055200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr9:118053800-118054200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:118053800-118054200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:118053800-118054400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr9:118053800-118054800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr9:118053800-118054800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:118053800-118055200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr9:118053800-118055200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:118053800-118055400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:118053800-118055400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:118053800-118055600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:118053800-118056000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:118054000-118054200	Enhancers	Fetal Stomach	stomach
36	chr9:118054000-118054400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr9:118054000-118054600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr9:118054000-118054800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr9:118054000-118054800	Enhancers	Adipose Nuclei	Adipose
40	chr9:118054000-118054800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:118054000-118054800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:118054000-118055200	Enhancers	Rectal Smooth Muscle	rectum
43	chr9:118054000-118055400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr9:118054000-118055400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:118054000-118055400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:118054000-118055400	Enhancers	HSMM	muscle
47	chr9:118054000-118055600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:118054000-118055800	Enhancers	Fetal Lung	lung
49	chr9:118054000-118056000	Enhancers	NH-A	brain
50	chr9:118054000-118056400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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