Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10481680	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs10817733	0.91[CHB][hapmap]
rs10817734	0.80[CHB][hapmap]
rs10817741	0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs10817742	0.90[ASN][1000 genomes]
rs10982621	0.81[CHB][hapmap]
rs12338583	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs16932390	0.95[CEU][hapmap]
rs2183700	0.95[CHB][hapmap]
rs2285314	0.86[CHB][hapmap]
rs2285315	0.88[ASN][1000 genomes]
rs2418327	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs2989508	0.95[CHB][hapmap]
rs2989509	0.90[CHB][hapmap]
rs2992142	0.95[CHB][hapmap]
rs2992144	0.95[CHB][hapmap]
rs4112338	0.90[CHB][hapmap]
rs4147051	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs72764238	0.81[ASN][1000 genomes]
rs7846857	0.90[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118042800-118052800	Weak transcription	Gastric	stomach
2	chr9:118044200-118051800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:118047600-118052800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:118048600-118054000	Weak transcription	HSMM	muscle
5	chr9:118049000-118053800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118049200-118052200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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