Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10982623	1.00[AFR][1000 genomes]
rs10982628	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10982629	0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10982630	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10982634	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10982639	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10982642	1.00[AFR][1000 genomes]
rs12376346	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12377961	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12378362	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs13288003	0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs13301328	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs1360822	0.81[ASN][1000 genomes]
rs1557603	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17246222	1.00[AFR][1000 genomes]
rs7024659	0.83[ASN][1000 genomes]
rs7044600	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs71505534	1.00[AFR][1000 genomes]
rs7869917	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs955387	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118060000-118073200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118062800-118064000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:118063400-118063800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:118063400-118063800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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