Variant report

Variant	rs10982623
Chromosome Location	chr9:118008308-118008309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10817729	0.90[CEU][hapmap]
rs10982578	1.00[ASN][1000 genomes]
rs10982628	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10982629	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs10982630	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10982634	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs10982639	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10982642	1.00[AFR][1000 genomes]
rs10982660	1.00[AFR][1000 genomes]
rs12376346	0.90[CEU][hapmap];1.00[AFR][1000 genomes]
rs12377961	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12378362	1.00[CEU][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes]
rs12378930	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs12380804	1.00[MEX][hapmap];1.00[MKK][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13288003	0.90[CEU][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes]
rs13296278	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13298466	1.00[CHB][hapmap]
rs13301328	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs1557603	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs17246222	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681459	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41307469	1.00[ASN][1000 genomes]
rs4344149	1.00[CHB][hapmap]
rs7044600	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs71505534	1.00[AFR][1000 genomes]
rs7869917	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs955387	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118000800-118012200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:118005400-118010000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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