Variant report

Variant	rs12378930
Chromosome Location	chr9:118031468-118031469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10982578	1.00[ASN][1000 genomes]
rs10982623	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10982629	1.00[MKK][hapmap]
rs10982634	1.00[MKK][hapmap]
rs12378362	1.00[MKK][hapmap]
rs12380804	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288003	1.00[MKK][hapmap]
rs13289840	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13296278	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298466	1.00[CHB][hapmap]
rs17246222	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28681459	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307469	1.00[ASN][1000 genomes]
rs4344149	1.00[CHB][hapmap]
rs955387	1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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