Variant report

Variant	rs13298466
Chromosome Location	chr9:118095662-118095663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118041220..118043892-chr9:118094396..118096112,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10982623	1.00[CHB][hapmap]
rs12378930	1.00[CHB][hapmap]
rs13284742	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13286646	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13287390	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13290701	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13293715	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13300423	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13301268	0.83[AMR][1000 genomes]
rs13301972	1.00[AFR][1000 genomes]
rs2188042	1.00[AFR][1000 genomes]
rs34302658	1.00[AFR][1000 genomes]
rs34313216	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34321307	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34466382	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34471912	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34568491	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34581742	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34705596	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34728021	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34748014	1.00[AFR][1000 genomes]
rs34816653	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34900397	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34928792	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34938648	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35132145	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35203429	1.00[AFR][1000 genomes]
rs35259015	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35365687	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35433621	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35468444	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35483504	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs35643606	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35770937	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35976675	1.00[AFR][1000 genomes]
rs36001303	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36007561	1.00[AFR][1000 genomes]
rs36078239	1.00[AFR][1000 genomes]
rs4344149	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56199075	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57096760	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60262778	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71505542	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71505544	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71505548	1.00[AFR][1000 genomes]
rs955387	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118091400-118095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:118091600-118095800	Weak transcription	NHDF-Ad	bronchial
4	chr9:118095000-118096200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:118095000-118096400	Enhancers	Fetal Lung	lung
6	chr9:118095200-118096000	Enhancers	Fetal Stomach	stomach
7	chr9:118095400-118096000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:118095400-118096000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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