Variant report

Variant	rs34900397
Chromosome Location	chr9:118116182-118116183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13284742	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs13286646	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13287390	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13290701	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13293715	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs13298466	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13300423	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13301268	0.95[AMR][1000 genomes]
rs13301972	1.00[AFR][1000 genomes]
rs2188042	1.00[AFR][1000 genomes]
rs34302658	1.00[AFR][1000 genomes]
rs34313216	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34321307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34466382	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34471912	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34568491	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34581742	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34705596	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34728021	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34748014	1.00[AFR][1000 genomes]
rs34816653	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34928792	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs34938648	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs35132145	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs35203429	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35259015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35365687	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35433621	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs35468444	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35483504	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35643606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35770937	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs35976675	1.00[AFR][1000 genomes]
rs36001303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007561	1.00[AFR][1000 genomes]
rs36078239	1.00[AFR][1000 genomes]
rs4344149	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56199075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57096760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60262778	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs71505542	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs71505544	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs71505548	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2761552	chr9:118113846-118157488	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118110800-118122400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:118112800-118121800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:118114800-118122000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:118115000-118118800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:118115000-118121800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:118115400-118116200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:118115400-118116600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:118115400-118116600	Enhancers	HMEC	breast
9	chr9:118115400-118116600	Enhancers	NHEK	skin
10	chr9:118115800-118116200	Enhancers	NHDF-Ad	bronchial
11	chr9:118115800-118116800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:118116000-118116400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:118116000-118116600	Enhancers	NHLF	lung

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