Variant report

Variant	rs10984219
Chromosome Location	chr9:100656685-100656686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100471544..100473232-chr9:100656611..100658428,2	K562	blood:
2	chr9:100639021..100641102-chr9:100655728..100657284,2	MCF-7	breast:
3	chr9:100648546..100652838-chr9:100654754..100658082,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf156-2	chr9:100655088-100658103	XLOC_007800

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10984540	1.00[AMR][1000 genomes]
rs12336353	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12342888	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13289390	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100637600-100658000	Weak transcription	Gastric	stomach
2	chr9:100652400-100657400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:100652600-100659600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:100652600-100662400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:100652800-100657400	Weak transcription	Primary T cells from cord blood	blood
6	chr9:100652800-100660200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:100652800-100662000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:100652800-100662000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:100652800-100666600	Weak transcription	Fetal Lung	lung
10	chr9:100653000-100657800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:100653000-100658200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:100653000-100660200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr9:100653000-100660400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:100653000-100662600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr9:100653000-100663400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:100653000-100667000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:100654200-100666600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:100654400-100657200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:100654600-100662400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:100655800-100656800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:100655800-100657400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:100655800-100658000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr9:100656000-100657800	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:100656000-100658000	Weak transcription	Pancreas	Pancrea
25	chr9:100656000-100658200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:100656000-100658200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr9:100656000-100662400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:100656000-100662400	Weak transcription	Primary B cells from cord blood	blood
29	chr9:100656000-100662400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:100656000-100662400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:100656000-100662600	Weak transcription	Adipose Nuclei	Adipose
32	chr9:100656000-100667600	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:100656000-100669400	Weak transcription	Brain Substantia Nigra	brain
34	chr9:100656200-100657400	Weak transcription	Brain Angular Gyrus	brain
35	chr9:100656200-100657600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:100656200-100658200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:100656200-100661800	Weak transcription	Fetal Stomach	stomach
38	chr9:100656200-100662800	Weak transcription	HSMM	muscle
39	chr9:100656200-100665600	Weak transcription	Dnd41	blood
40	chr9:100656200-100666800	Weak transcription	Brain Germinal Matrix	brain
41	chr9:100656200-100670400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:100656400-100658000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:100656400-100658000	Weak transcription	Ovary	ovary
44	chr9:100656400-100668400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:100656400-100669800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:100656400-100669800	Weak transcription	Fetal Brain Female	brain
47	chr9:100656600-100658000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:100656600-100659200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr9:100656600-100660200	Weak transcription	Thymus	Thymus
50	chr9:100656600-100662200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links