Variant report

Variant	rs12342888
Chromosome Location	chr9:100623566-100623567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10984219	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10984540	1.00[AMR][1000 genomes]
rs12336353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12345171	1.00[AFR][1000 genomes]
rs13289390	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16925130	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100620800-100625800	Weak transcription	Gastric	stomach
2	chr9:100622600-100623600	Enhancers	NHEK	skin
3	chr9:100622800-100623600	Enhancers	HSMMtube	muscle
4	chr9:100623400-100625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:100623400-100625400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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