Variant report

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100716917..100718589-chr9:100720571..100722147,3	K562	blood:
2	chr9:100713649..100719134-chr9:100743191..100747576,7	MCF-7	breast:
3	chr9:100684836..100688272-chr9:100714444..100717597,4	K562	blood:
4	chr9:100706165..100709021-chr9:100715689..100718287,2	MCF-7	breast:
5	chr9:100701698..100704267-chr9:100715673..100717593,3	K562	blood:
6	chr9:100705105..100707859-chr9:100714354..100717557,3	K562	blood:
7	chr9:100472803..100473512-chr9:100716512..100717511,2	MCF-7	breast:
8	chr9:100684849..100687327-chr9:100715960..100717542,31	MCF-7	breast:
9	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
10	chr9:100681885..100689095-chr9:100713866..100720156,11	MCF-7	breast:
11	chr9:100704268..100707932-chr9:100713154..100718710,6	K562	blood:
12	chr9:100683535..100689169-chr9:100714844..100718494,7	K562	blood:
13	chr9:100690903..100692995-chr9:100717083..100718870,2	K562	blood:
14	chr9:100685705..100686550-chr9:100716442..100717415,9	MCF-7	breast:
15	chr9:100697884..100704099-chr9:100714128..100720073,9	K562	blood:
16	chr9:100717154..100719569-chr9:100723550..100725894,3	K562	blood:
17	chr9:100697884..100700117-chr9:100716983..100718742,2	K562	blood:
18	chr9:100716593..100718657-chr9:100745564..100747755,5	MCF-7	breast:
19	chr9:100716666..100719267-chr9:100720012..100722937,7	K562	blood:
20	chr9:100685020..100686845-chr9:100716549..100717520,12	K562	blood:
21	chr9:100716579..100718542-chr9:100728846..100731409,2	K562	blood:
22	chr9:100684440..100688898-chr9:100715006..100719142,6	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1007506	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs10818284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10984195	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10984222	1.00[JPT][hapmap]
rs10984311	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10984421	0.94[ASN][1000 genomes]
rs10984422	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10984424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10984479	1.00[ASN][1000 genomes]
rs10984481	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11535523	1.00[ASN][1000 genomes]
rs3758250	1.00[JPT][hapmap]
rs3808895	1.00[JPT][hapmap]
rs4743149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr9:100713800-100718800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr9:100716600-100717600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:100716600-100717800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:100716800-100717400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:100716800-100717400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr9:100716800-100718000	Enhancers	Fetal Thymus	thymus
8	chr9:100717000-100718000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:100717200-100717400	Enhancers	Stomach Mucosa	stomach
10	chr9:100717200-100718000	Enhancers	Thymus	Thymus
11	chr9:100717200-100719600	Enhancers	K562	blood

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