Variant report

Variant	rs10984422
Chromosome Location	chr9:100695396-100695397
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100684548..100686454-chr9:100694702..100696797,2	MCF-7	breast:
2	chr9:100693503..100695720-chr9:100740992..100742797,2	MCF-7	breast:
3	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
4	chr9:100695365..100698357-chr9:100723425..100724999,2	K562	blood:
5	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:

Variant related genes	Relation type
ENSG00000236896	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1007506	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs10818284	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10984195	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10984222	1.00[JPT][hapmap]
rs10984311	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10984393	0.80[ASN][1000 genomes]
rs10984421	1.00[ASN][1000 genomes]
rs10984424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10984479	0.94[ASN][1000 genomes]
rs10984481	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10984510	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11535523	0.94[ASN][1000 genomes]
rs3758250	1.00[JPT][hapmap]
rs3808895	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4743149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100691400-100695400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:100693400-100700400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr9:100693600-100696200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:100693800-100695600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr9:100693800-100695600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:100693800-100696200	Enhancers	Primary T cells from cord blood	blood
7	chr9:100693800-100696200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:100693800-100696800	Enhancers	Primary hematopoietic stem cells	blood
9	chr9:100693800-100696800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr9:100694200-100695400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:100694400-100695800	Weak transcription	Fetal Thymus	thymus
12	chr9:100694400-100697600	Weak transcription	Dnd41	blood
13	chr9:100694400-100699200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:100694600-100695600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr9:100694600-100695800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:100694600-100696000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:100694600-100697000	Weak transcription	Thymus	Thymus
18	chr9:100694600-100700000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:100694800-100695400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:100695000-100696000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr9:100695200-100699600	Transcr. at gene 5' and 3'	K562	blood

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