Variant report

Variant	rs10984393
Chromosome Location	chr9:100687481-100687482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
2	chr9:100685586..100688165-chr9:100878796..100881297,2	K562	blood:
3	chr9:100685930..100687826-chr9:100769901..100771666,3	K562	blood:
4	chr9:100685576..100688537-chr9:100780625..100782385,2	K562	blood:
5	chr9:100683337..100688322-chr9:101015638..101019207,5	MCF-7	breast:
6	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
7	chr9:100685514..100687681-chr9:100731460..100733588,2	K562	blood:
8	chr9:100686261..100688755-chr9:100806613..100809213,2	K562	blood:
9	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:
10	chr2:131894199..131896837-chr9:100685147..100687682,2	MCF-7	breast:
11	chr9:100685127..100688021-chr9:100778345..100779899,2	MCF-7	breast:
12	chr9:100686277..100688519-chr9:100689376..100691185,2	MCF-7	breast:
13	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
14	chr9:100686308..100689678-chr9:101021142..101024168,3	MCF-7	breast:
15	chr9:100683275..100686964-chr9:100687287..100689294,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10818284	0.80[ASN][1000 genomes]
rs10984079	0.81[ASN][1000 genomes]
rs10984134	0.81[ASN][1000 genomes]
rs10984156	0.81[ASN][1000 genomes]
rs10984195	0.86[ASN][1000 genomes]
rs10984218	0.86[ASN][1000 genomes]
rs10984222	0.86[ASN][1000 genomes]
rs10984311	0.95[ASN][1000 genomes]
rs10984421	0.80[ASN][1000 genomes]
rs10984422	0.80[ASN][1000 genomes]
rs10984424	0.80[ASN][1000 genomes]
rs2120262	0.82[ASN][1000 genomes]
rs2282190	0.86[ASN][1000 genomes]
rs28417086	0.86[ASN][1000 genomes]
rs28697997	0.86[ASN][1000 genomes]
rs3021525	0.83[ASN][1000 genomes]
rs3758250	0.83[ASN][1000 genomes]
rs3808895	0.95[ASN][1000 genomes]
rs72753537	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100685200-100687600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:100685400-100687800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:100686200-100690800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:100686200-100691400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:100686200-100692200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:100686200-100692200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:100686400-100690800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:100686600-100690600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:100686600-100690600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:100686600-100690600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:100686600-100691000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:100686800-100690600	Weak transcription	Thymus	Thymus
13	chr9:100686800-100691200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:100687000-100688000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:100687200-100687800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:100687200-100687800	Weak transcription	K562	blood
17	chr9:100687200-100687800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr9:100687200-100688000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:100687200-100689800	Weak transcription	Primary T cells from cord blood	blood
20	chr9:100687200-100691400	Weak transcription	Fetal Thymus	thymus
21	chr9:100687400-100688800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:100687400-100690800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links