Variant report

Variant	rs10984079
Chromosome Location	chr9:100633166-100633167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100628773..100631204-chr9:100631970..100633555,2	K562	blood:
2	chr9:100632180..100634200-chr9:100639047..100640743,2	MCF-7	breast:
3	chr9:100629300..100631204-chr9:100631970..100633926,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXE1-1	chr9:100632619-100633269	NONHSAT133534

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1007506	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10115216	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10119760	0.85[ASN][1000 genomes]
rs10120412	0.85[ASN][1000 genomes]
rs10122541	0.85[ASN][1000 genomes]
rs10512255	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs10739526	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10818175	0.85[ASN][1000 genomes]
rs10818284	1.00[JPT][hapmap]
rs10983835	0.82[ASN][1000 genomes]
rs10983836	0.82[ASN][1000 genomes]
rs10983852	0.82[ASN][1000 genomes]
rs10983867	0.82[ASN][1000 genomes]
rs10983868	0.82[ASN][1000 genomes]
rs10984103	0.85[ASN][1000 genomes]
rs10984134	1.00[ASN][1000 genomes]
rs10984156	1.00[ASN][1000 genomes]
rs10984195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10984218	0.95[ASN][1000 genomes]
rs10984222	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10984235	0.81[ASN][1000 genomes]
rs10984253	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10984311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10984393	0.81[ASN][1000 genomes]
rs10984422	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs10984424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10984481	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs10984510	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs12004762	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs12006522	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs12342417	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs12343182	0.85[ASN][1000 genomes]
rs13299924	0.85[ASN][1000 genomes]
rs1443436	0.85[ASN][1000 genomes]
rs1561957	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs1561961	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs1955144	0.85[ASN][1000 genomes]
rs1955145	0.85[ASN][1000 genomes]
rs2120262	0.90[CHB][hapmap]
rs2120264	0.85[ASN][1000 genomes]
rs2282190	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs2417575	0.85[ASN][1000 genomes]
rs2417576	0.85[ASN][1000 genomes]
rs28417086	0.95[ASN][1000 genomes]
rs28697997	0.95[ASN][1000 genomes]
rs3021525	0.98[ASN][1000 genomes]
rs3758250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3808893	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs3808895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3824495	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs4743149	1.00[JPT][hapmap]
rs6478469	0.83[ASN][1000 genomes]
rs6478471	0.83[ASN][1000 genomes]
rs7022148	0.83[ASN][1000 genomes]
rs7027221	0.83[ASN][1000 genomes]
rs7031386	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7032114	0.83[ASN][1000 genomes]
rs7034249	0.83[ASN][1000 genomes]
rs7034336	0.86[CHB][hapmap]
rs7034648	0.83[ASN][1000 genomes]
rs7036589	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs7037175	0.85[ASN][1000 genomes]
rs7037324	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7037853	0.82[ASN][1000 genomes]
rs7038998	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7044799	0.83[ASN][1000 genomes]
rs7048255	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs72753537	0.91[ASN][1000 genomes]
rs7860144	0.85[ASN][1000 genomes]
rs7866436	0.83[ASN][1000 genomes]
rs7868534	0.85[ASN][1000 genomes]
rs9299258	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100631800-100635800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:100631800-100636000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:100631800-100636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:100631800-100639400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:100633000-100635800	Weak transcription	Hela-S3	cervix

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