Variant report
| Variant | rs10983852 |
|---|---|
| Chromosome Location | chr9:100579747-100579748 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:100578409..100580870-chr9:100683112..100684789,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136932 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1006047 | 0.93[ASN][1000 genomes] |
| rs1007506 | 0.93[ASN][1000 genomes] |
| rs10983835 | 1.00[ASN][1000 genomes] |
| rs10983836 | 1.00[ASN][1000 genomes] |
| rs10983867 | 1.00[ASN][1000 genomes] |
| rs10983868 | 1.00[ASN][1000 genomes] |
| rs10984079 | 0.82[ASN][1000 genomes] |
| rs10984134 | 0.82[ASN][1000 genomes] |
| rs10984156 | 0.82[ASN][1000 genomes] |
| rs10984195 | 0.82[ASN][1000 genomes] |
| rs10984218 | 0.82[ASN][1000 genomes] |
| rs10984222 | 0.82[ASN][1000 genomes] |
| rs2282190 | 0.82[ASN][1000 genomes] |
| rs28417086 | 0.82[ASN][1000 genomes] |
| rs28697997 | 0.82[ASN][1000 genomes] |
| rs3021525 | 0.84[ASN][1000 genomes] |
| rs3758250 | 0.84[ASN][1000 genomes] |
| rs4639621 | 0.93[ASN][1000 genomes] |
| rs7037853 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043753 | chr9:100458109-100599265 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv893611 | chr9:100561055-100739888 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv6627 | chr9:100576258-100621034 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
