Variant report

Variant	rs7037853
Chromosome Location	chr9:100585131-100585132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100564515..100567893-chr9:100582298..100586043,4	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1006047	0.93[ASN][1000 genomes]
rs1007506	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10115216	0.80[CHB][hapmap]
rs10512255	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs10739526	0.80[CHB][hapmap]
rs10818284	1.00[JPT][hapmap]
rs10983835	1.00[ASN][1000 genomes]
rs10983836	1.00[ASN][1000 genomes]
rs10983852	1.00[ASN][1000 genomes]
rs10983867	1.00[ASN][1000 genomes]
rs10983868	1.00[ASN][1000 genomes]
rs10984079	0.82[ASN][1000 genomes]
rs10984134	0.82[ASN][1000 genomes]
rs10984156	0.82[ASN][1000 genomes]
rs10984195	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10984218	0.82[ASN][1000 genomes]
rs10984222	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10984253	0.80[CHB][hapmap]
rs10984311	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10984422	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs10984424	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10984481	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs10984510	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs12001689	1.00[AMR][1000 genomes]
rs12004762	0.80[CHB][hapmap]
rs12006522	0.80[CHB][hapmap]
rs12342417	0.80[CHB][hapmap]
rs1561957	0.80[CHB][hapmap]
rs1561961	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs16924908	1.00[AMR][1000 genomes]
rs16924982	1.00[AMR][1000 genomes]
rs2120262	0.80[CHB][hapmap]
rs2282190	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs28417086	0.82[ASN][1000 genomes]
rs28697997	0.82[ASN][1000 genomes]
rs3021525	0.84[ASN][1000 genomes]
rs3758250	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3808893	0.80[CHB][hapmap]
rs3808895	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3824495	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs4639621	0.93[ASN][1000 genomes]
rs4743149	1.00[JPT][hapmap]
rs7031386	0.80[CHB][hapmap]
rs7036589	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs7037324	0.80[CHB][hapmap]
rs7048255	0.86[CHB][hapmap]
rs7049203	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9299258	0.80[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7037853	Hs.43687	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100581400-100586400	Weak transcription	H9 Cell Line	embryonic stem cell

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