Variant report

Variant	rs3021525
Chromosome Location	chr9:100616910-100616911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100616472..100617973-chr9:100620292..100623040,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10115216	0.85[ASN][1000 genomes]
rs10119760	0.83[ASN][1000 genomes]
rs10120412	0.83[ASN][1000 genomes]
rs10122541	0.83[ASN][1000 genomes]
rs10512255	0.85[ASN][1000 genomes]
rs10739526	0.85[ASN][1000 genomes]
rs10818175	0.83[ASN][1000 genomes]
rs10983835	0.84[ASN][1000 genomes]
rs10983836	0.84[ASN][1000 genomes]
rs10983852	0.84[ASN][1000 genomes]
rs10983867	0.84[ASN][1000 genomes]
rs10983868	0.84[ASN][1000 genomes]
rs10984079	0.98[ASN][1000 genomes]
rs10984103	0.83[ASN][1000 genomes]
rs10984134	0.98[ASN][1000 genomes]
rs10984156	0.98[ASN][1000 genomes]
rs10984195	0.98[ASN][1000 genomes]
rs10984218	0.98[ASN][1000 genomes]
rs10984222	0.98[ASN][1000 genomes]
rs10984235	0.83[ASN][1000 genomes]
rs10984253	0.85[ASN][1000 genomes]
rs10984311	0.88[ASN][1000 genomes]
rs10984393	0.83[ASN][1000 genomes]
rs12004762	0.85[ASN][1000 genomes]
rs12006522	0.85[ASN][1000 genomes]
rs12342417	0.83[ASN][1000 genomes]
rs12343182	0.83[ASN][1000 genomes]
rs13299924	0.83[ASN][1000 genomes]
rs1443436	0.83[ASN][1000 genomes]
rs1561957	0.85[ASN][1000 genomes]
rs1561961	0.85[ASN][1000 genomes]
rs1955144	0.83[ASN][1000 genomes]
rs1955145	0.83[ASN][1000 genomes]
rs2120264	0.83[ASN][1000 genomes]
rs2282190	0.98[ASN][1000 genomes]
rs2417575	0.83[ASN][1000 genomes]
rs2417576	0.83[ASN][1000 genomes]
rs28417086	0.98[ASN][1000 genomes]
rs28697997	0.98[ASN][1000 genomes]
rs3758250	1.00[ASN][1000 genomes]
rs3808893	0.85[ASN][1000 genomes]
rs3808895	0.88[ASN][1000 genomes]
rs3824495	0.85[ASN][1000 genomes]
rs6478469	0.85[ASN][1000 genomes]
rs6478471	0.85[ASN][1000 genomes]
rs7022148	0.85[ASN][1000 genomes]
rs7027221	0.85[ASN][1000 genomes]
rs7031386	0.85[ASN][1000 genomes]
rs7032114	0.85[ASN][1000 genomes]
rs7034249	0.85[ASN][1000 genomes]
rs7034648	0.85[ASN][1000 genomes]
rs7036589	0.85[ASN][1000 genomes]
rs7037175	0.83[ASN][1000 genomes]
rs7037324	0.85[ASN][1000 genomes]
rs7037853	0.84[ASN][1000 genomes]
rs7038998	0.85[ASN][1000 genomes]
rs7044799	0.85[ASN][1000 genomes]
rs7048255	0.85[ASN][1000 genomes]
rs72753537	0.93[ASN][1000 genomes]
rs7860144	0.83[ASN][1000 genomes]
rs7866436	0.85[ASN][1000 genomes]
rs7868534	0.83[ASN][1000 genomes]
rs9299258	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv825000	chr9:100613121-100618319	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3330300	chr9:100613506-100618154	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3421459	chr9:100614656-100617704	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100613400-100618800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:100613600-100618000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:100613800-100617400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:100613800-100617800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:100614000-100617800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr9:100614000-100617800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:100615000-100617000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:100615000-100617000	Bivalent/Poised TSS	NHEK	skin
9	chr9:100615200-100617000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:100615200-100617000	Bivalent/Poised TSS	HSMM	muscle
11	chr9:100615200-100617200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:100615600-100617000	Active TSS	A549	lung
13	chr9:100615600-100617200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:100615600-100617400	Active TSS	Hela-S3	cervix
15	chr9:100615800-100617200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:100616000-100617000	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:100616000-100617000	Bivalent/Poised TSS	Fetal Brain Female	brain
18	chr9:100616000-100617200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr9:100616000-100617200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr9:100616000-100617200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr9:100616000-100617200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:100616000-100617200	Flanking Bivalent TSS/Enh	Thymus	Thymus
23	chr9:100616200-100617000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:100616200-100617000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:100616200-100617000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
26	chr9:100616200-100617000	Bivalent/Poised TSS	Ovary	ovary
27	chr9:100616200-100617200	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
28	chr9:100616600-100617000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:100616600-100617000	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:100616600-100617000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:100616600-100617200	Bivalent Enhancer	Lung	lung
32	chr9:100616600-100617600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:100616600-100617600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr9:100616600-100617600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr9:100616600-100617600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
36	chr9:100616600-100617600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr9:100616800-100617000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:100616800-100617000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
39	chr9:100616800-100617000	Bivalent/Poised TSS	Psoas Muscle	Psoas
40	chr9:100616800-100617000	Flanking Bivalent TSS/Enh	Right Ventricle	heart
41	chr9:100616800-100617000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
42	chr9:100616800-100617200	Bivalent Enhancer	Primary B cells from cord blood	blood
43	chr9:100616800-100617200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
44	chr9:100616800-100617400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
45	chr9:100616800-100617400	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
46	chr9:100616800-100617400	Weak transcription	Pancreas	Pancrea
47	chr9:100616800-100617600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:100616800-100617600	ZNF genes & repeats	Spleen	Spleen
49	chr9:100616800-100618000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:100616800-100618400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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